Variant report

Variant	rs28444303
Chromosome Location	chr7:102474843-102474844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10156027	1.00[AMR][1000 genomes]
rs10225811	1.00[AMR][1000 genomes]
rs10232029	1.00[AMR][1000 genomes]
rs10239891	1.00[AMR][1000 genomes]
rs10242506	1.00[AMR][1000 genomes]
rs10248082	1.00[AMR][1000 genomes]
rs10254234	1.00[AMR][1000 genomes]
rs10255596	1.00[AMR][1000 genomes]
rs10260888	1.00[AMR][1000 genomes]
rs10261565	1.00[AMR][1000 genomes]
rs10277828	1.00[AMR][1000 genomes]
rs10281578	1.00[AMR][1000 genomes]
rs10282582	1.00[AMR][1000 genomes]
rs28722504	1.00[AMR][1000 genomes]
rs58612464	1.00[AMR][1000 genomes]
rs6949710	1.00[AMR][1000 genomes]
rs6970026	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2761100	chr7:102335787-102481978	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv608059	chr7:102470455-102504773	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102421600-102475600	Weak transcription	Fetal Thymus	thymus
2	chr7:102422000-102476000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:102447400-102477200	Weak transcription	Psoas Muscle	Psoas
4	chr7:102448000-102479000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:102450000-102475000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:102450200-102475600	Weak transcription	Esophagus	oesophagus
7	chr7:102452000-102480000	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:102454200-102484600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:102454400-102475000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:102454600-102475000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:102454600-102475600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr7:102455000-102475000	Weak transcription	NHLF	lung
13	chr7:102455000-102475000	Weak transcription	Osteobl	bone
14	chr7:102459800-102481800	Weak transcription	Brain Substantia Nigra	brain
15	chr7:102460000-102475000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:102460200-102475200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:102460400-102477000	Weak transcription	Stomach Mucosa	stomach
18	chr7:102460400-102480800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:102460800-102480800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:102463200-102475000	Weak transcription	A549	lung
21	chr7:102466400-102475000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:102468000-102475000	Weak transcription	HMEC	breast
23	chr7:102468000-102484600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:102468200-102481000	Weak transcription	Brain Germinal Matrix	brain
25	chr7:102469800-102477600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:102469800-102478400	Weak transcription	Fetal Intestine Small	intestine
27	chr7:102469800-102478800	Weak transcription	Primary B cells from cord blood	blood
28	chr7:102470000-102475600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:102470000-102477600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:102470000-102478000	Weak transcription	HepG2	liver
31	chr7:102470000-102479000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:102470000-102490200	Weak transcription	Gastric	stomach
33	chr7:102470000-102516400	Weak transcription	Pancreas	Pancrea
34	chr7:102470200-102475000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:102470200-102475000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:102470200-102475000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:102470200-102476800	Weak transcription	Fetal Heart	heart
38	chr7:102470200-102477000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:102470200-102478400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr7:102470200-102481800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:102470400-102475000	Weak transcription	NH-A	brain
42	chr7:102470400-102476800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:102470400-102477200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:102470400-102477600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:102470400-102477600	Weak transcription	Fetal Intestine Large	intestine
46	chr7:102470400-102477600	Weak transcription	Fetal Muscle Leg	muscle
47	chr7:102470400-102477600	Weak transcription	Ovary	ovary
48	chr7:102470400-102479800	Weak transcription	Lung	lung
49	chr7:102470400-102480400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr7:102470400-102481600	Weak transcription	Brain Hippocampus Middle	brain

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