Variant report

Variant	rs10225811
Chromosome Location	chr7:102615714-102615715
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr7:102615025-102615790	K562	blood:	n/a	n/a
2	CTCF	chr7:102615316-102615844	K562	blood:	n/a	n/a
3	CTCF	chr7:102615580-102615730	WI-38	lung:	n/a	n/a
4	SMC3	chr7:102615517-102615763	K562	blood:	n/a	n/a
5	CTCF	chr7:102615458-102615784	GM12878	blood:	n/a	n/a
6	CTCF	chr7:102615424-102615784	A549	lung:	n/a	n/a
7	YY1	chr7:102615467-102615723	H1-hESC	embryonic stem cell:	n/a	chr7:102615558-102615570
8	CBX3	chr7:102615174-102615822	K562	blood:	n/a	n/a
9	POLR2A	chr7:102615170-102615724	K562	blood:	n/a	n/a
10	RAD21	chr7:102615498-102615871	HCT-116	colon:	n/a	n/a
11	RAD21	chr7:102615380-102615835	H1-hESC	embryonic stem cell:	n/a	n/a
12	CTCF	chr7:102615302-102615753	A549	lung:	n/a	n/a
13	RAD21	chr7:102615310-102615885	HCT-116	colon:	n/a	n/a
14	RCOR1	chr7:102615654-102615768	K562	blood:	n/a	n/a
15	CTCF	chr7:102615404-102615715	K562	blood:	n/a	n/a
16	RAD21	chr7:102615369-102615798	H1-hESC	embryonic stem cell:	n/a	n/a
17	NR2F2	chr7:102613345-102616007	K562	blood:	n/a	n/a
18	POLR2A	chr7:102614981-102615729	K562	blood:	n/a	n/a
19	CTCF	chr7:102615424-102615803	K562	blood:	n/a	n/a
20	RAD21	chr7:102615277-102615925	SK-N-SH	brain:	n/a	n/a
21	EP300	chr7:102615507-102615721	K562	blood:	n/a	n/a
22	TEAD4	chr7:102614720-102615994	K562	blood:	n/a	n/a
23	RAD21	chr7:102615405-102615720	HepG2	liver:	n/a	n/a
24	POLR2A	chr7:102614755-102615714	K562	blood:	n/a	n/a
25	RAD21	chr7:102615431-102615725	K562	blood:	n/a	n/a
26	RAD21	chr7:102615419-102615725	HepG2	liver:	n/a	n/a
27	POLR2A	chr7:102614740-102616726	K562	blood:	n/a	n/a
28	RAD21	chr7:102615480-102615872	A549	lung:	n/a	n/a
29	HEY1	chr7:102614741-102615779	K562	blood:	n/a	n/a
30	RAD21	chr7:102615415-102615802	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr7:102615412-102615718	K562	blood:	n/a	n/a
32	RAD21	chr7:102615391-102615856	ECC-1	luminal epithelium:	n/a	n/a
33	RAD21	chr7:102615383-102615845	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102451931..102453738-chr7:102614138..102615717,2	K562	blood:
2	chr7:102452440..102454909-chr7:102615064..102617723,2	K562	blood:

No data

Variant related genes	Relation type
FBXL13	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10156027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232029	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239891	1.00[AMR][1000 genomes]
rs10241815	1.00[AFR][1000 genomes]
rs10241827	1.00[AFR][1000 genomes]
rs10241926	1.00[AFR][1000 genomes]
rs10242506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248082	1.00[AMR][1000 genomes]
rs10253514	0.80[AFR][1000 genomes]
rs10254234	1.00[AMR][1000 genomes]
rs10255596	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261565	1.00[AMR][1000 genomes]
rs10277828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281578	1.00[AMR][1000 genomes]
rs10282582	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28444303	1.00[AMR][1000 genomes]
rs28452903	1.00[AFR][1000 genomes]
rs28482805	0.89[AFR][1000 genomes]
rs28722504	1.00[AMR][1000 genomes]
rs28894762	1.00[AFR][1000 genomes]
rs58593428	1.00[AFR][1000 genomes]
rs58612464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944594	0.85[AFR][1000 genomes]
rs6949710	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951111	1.00[AFR][1000 genomes]
rs6953456	1.00[AFR][1000 genomes]
rs6970026	1.00[AMR][1000 genomes]
rs7792008	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv5881	chr7:102610488-102655699	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv3366768	chr7:102613816-102618977	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv11760	chr7:102614464-102617348	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102591000-102619400	Weak transcription	HSMM	muscle
2	chr7:102608800-102618600	Weak transcription	Osteobl	bone
3	chr7:102613000-102625600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102613200-102631200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:102613600-102615800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr7:102613800-102617000	Weak transcription	Fetal Stomach	stomach
7	chr7:102613800-102618600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:102614200-102618600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:102614200-102618800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:102615000-102618000	Transcr. at gene 5' and 3'	K562	blood
11	chr7:102615600-102618600	Weak transcription	HUVEC	blood vessel
12	chr7:102615600-102619000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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