Variant report

Variant	rs6953456
Chromosome Location	chr7:102688868-102688869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10156027	0.89[AFR][1000 genomes]
rs10225811	1.00[AFR][1000 genomes]
rs10232029	0.89[AFR][1000 genomes]
rs10241815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242506	0.95[AFR][1000 genomes]
rs10245037	1.00[AMR][1000 genomes]
rs10246237	1.00[AMR][1000 genomes]
rs10252006	1.00[AMR][1000 genomes]
rs10253514	0.80[AFR][1000 genomes]
rs10255596	0.89[AFR][1000 genomes]
rs10255884	1.00[AMR][1000 genomes]
rs10259126	1.00[AMR][1000 genomes]
rs10260888	0.95[AFR][1000 genomes]
rs10271644	1.00[AMR][1000 genomes]
rs10277828	1.00[AFR][1000 genomes]
rs10279752	1.00[AMR][1000 genomes]
rs10279918	1.00[AMR][1000 genomes]
rs10282582	0.84[AFR][1000 genomes]
rs28452903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482805	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28894762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4480048	1.00[AMR][1000 genomes]
rs4612274	1.00[AMR][1000 genomes]
rs56703102	1.00[AMR][1000 genomes]
rs58593428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58612464	0.95[AFR][1000 genomes]
rs6944594	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949710	0.89[AFR][1000 genomes]
rs6951111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794374	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102683400-102695800	Weak transcription	Fetal Kidney	kidney
3	chr7:102684200-102690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102684200-102708000	Weak transcription	Pancreas	Pancrea
5	chr7:102688400-102689800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:102688800-102691000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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