Variant report

Variant	rs10241815
Chromosome Location	chr7:102712987-102712988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102711380..102713849-chr7:102713852..102716556,3	MCF-7	breast:
2	chr7:102712172..102716042-chr7:102726342..102729326,4	K562	blood:
3	chr7:102710661..102713218-chr7:102714768..102717114,2	K562	blood:

Variant related genes	Relation type
ENSG00000161040	Chromatin interaction
ENSG00000170632	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10156027	0.89[AFR][1000 genomes]
rs10225811	1.00[AFR][1000 genomes]
rs10232029	0.89[AFR][1000 genomes]
rs10241827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242506	0.95[AFR][1000 genomes]
rs10243055	1.00[AMR][1000 genomes]
rs10245037	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10246237	1.00[AMR][1000 genomes]
rs10247278	0.85[MKK][hapmap];1.00[YRI][hapmap]
rs10252006	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10253514	1.00[ASW][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10255596	0.89[AFR][1000 genomes]
rs10255884	1.00[AMR][1000 genomes]
rs10259126	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10260888	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10271644	1.00[AMR][1000 genomes]
rs10277828	1.00[AFR][1000 genomes]
rs10279752	1.00[AMR][1000 genomes]
rs10279918	1.00[AMR][1000 genomes]
rs10282582	0.84[AFR][1000 genomes]
rs10441305	1.00[AMR][1000 genomes]
rs28399298	1.00[AMR][1000 genomes]
rs28452903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482805	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28602812	1.00[ASW][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs28894762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4480048	1.00[AMR][1000 genomes]
rs4612274	1.00[AMR][1000 genomes]
rs56703102	1.00[AMR][1000 genomes]
rs58593428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58612464	0.95[AFR][1000 genomes]
rs6944594	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949710	0.89[AFR][1000 genomes]
rs6951111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792008	1.00[ASW][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794374	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102702200-102713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:102702200-102714600	Weak transcription	Ovary	ovary
4	chr7:102706800-102714000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:102709000-102714200	Weak transcription	Fetal Lung	lung
6	chr7:102710200-102713800	Weak transcription	Pancreas	Pancrea
7	chr7:102710200-102714400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:102711400-102714000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:102711400-102714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:102712800-102713000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:102712800-102713000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:102712800-102713000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:102712800-102713000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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