Variant report

Variant	rs10282582
Chromosome Location	chr7:102507990-102507991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102504642..102507106-chr7:102507263..102511653,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10156027	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225811	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232029	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239891	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241815	0.84[AFR][1000 genomes]
rs10241827	0.84[AFR][1000 genomes]
rs10241926	0.84[AFR][1000 genomes]
rs10242506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248082	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254234	1.00[AMR][1000 genomes]
rs10255596	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260888	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281578	1.00[AMR][1000 genomes]
rs28444303	1.00[AMR][1000 genomes]
rs28452903	0.84[AFR][1000 genomes]
rs28482805	0.84[AFR][1000 genomes]
rs28722504	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28894762	0.84[AFR][1000 genomes]
rs58593428	0.84[AFR][1000 genomes]
rs58612464	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949710	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951111	0.84[AFR][1000 genomes]
rs6953456	0.84[AFR][1000 genomes]
rs6970026	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792008	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv5880	chr7:102505158-102550471	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102470000-102516400	Weak transcription	Pancreas	Pancrea
2	chr7:102500600-102513800	Weak transcription	Aorta	Aorta
3	chr7:102500600-102514200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:102500600-102518400	Weak transcription	Left Ventricle	heart
5	chr7:102501000-102511200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:102501000-102512200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:102501200-102515800	Weak transcription	Gastric	stomach
8	chr7:102501200-102530800	Weak transcription	Ovary	ovary
9	chr7:102502000-102508800	Weak transcription	HepG2	liver
10	chr7:102502600-102516200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:102503800-102513800	Weak transcription	Brain Substantia Nigra	brain
12	chr7:102504400-102512400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:102504600-102513000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:102504800-102516200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:102505600-102511000	Weak transcription	HUVEC	blood vessel
16	chr7:102506400-102508000	Enhancers	Fetal Lung	lung
17	chr7:102507200-102508000	Genic enhancers	K562	blood
18	chr7:102507400-102512400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:102507400-102512400	Weak transcription	A549	lung
20	chr7:102507400-102519400	Weak transcription	Fetal Kidney	kidney
21	chr7:102507600-102508000	Enhancers	Fetal Stomach	stomach
22	chr7:102507600-102509200	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:102507600-102512200	Weak transcription	HSMM	muscle

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