Variant report

Variant	rs10255596
Chromosome Location	chr7:102546683-102546684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10156027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225811	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239891	1.00[AMR][1000 genomes]
rs10241815	0.89[AFR][1000 genomes]
rs10241827	0.89[AFR][1000 genomes]
rs10241926	0.89[AFR][1000 genomes]
rs10242506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248082	1.00[AMR][1000 genomes]
rs10253514	0.80[AFR][1000 genomes]
rs10254234	1.00[AMR][1000 genomes]
rs10260888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261565	1.00[AMR][1000 genomes]
rs10277828	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10281578	1.00[AMR][1000 genomes]
rs10282582	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28444303	1.00[AMR][1000 genomes]
rs28452903	0.89[AFR][1000 genomes]
rs28722504	1.00[AMR][1000 genomes]
rs28894762	0.89[AFR][1000 genomes]
rs58593428	0.89[AFR][1000 genomes]
rs58612464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951111	0.89[AFR][1000 genomes]
rs6953456	0.89[AFR][1000 genomes]
rs6970026	1.00[AMR][1000 genomes]
rs7792008	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv5880	chr7:102505158-102550471	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517000-102549600	Weak transcription	Gastric	stomach
2	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:102522600-102549200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102538400-102553200	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:102539200-102551800	Weak transcription	Fetal Lung	lung
6	chr7:102539200-102553000	Weak transcription	Right Atrium	heart
7	chr7:102541600-102549000	Weak transcription	K562	blood

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