Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10046531	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234196	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235693	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241815	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10243055	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245037	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10246237	1.00[AMR][1000 genomes]
rs10247278	1.00[YRI][hapmap]
rs10252006	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10255884	1.00[AMR][1000 genomes]
rs10258184	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259126	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10271644	1.00[AMR][1000 genomes]
rs10273102	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279752	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279918	1.00[AMR][1000 genomes]
rs10441305	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2079253	0.80[AFR][1000 genomes]
rs28399298	1.00[AMR][1000 genomes]
rs28452903	1.00[AMR][1000 genomes]
rs28482805	1.00[AMR][1000 genomes]
rs28602812	1.00[YRI][hapmap]
rs28605237	1.00[AMR][1000 genomes]
rs28894762	1.00[AMR][1000 genomes]
rs4480048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4612274	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56703102	1.00[AMR][1000 genomes]
rs58192762	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944594	1.00[AMR][1000 genomes]
rs6951111	1.00[AMR][1000 genomes]
rs6953456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1794417	chr7:102814101-102928545	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv981567	chr7:102850992-102924834	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102907400-102919400	Weak transcription	Fetal Brain Male	brain
2	chr7:102907800-102919600	Weak transcription	Fetal Thymus	thymus
3	chr7:102907800-102920000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:102908000-102914200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:102908000-102915800	Weak transcription	Dnd41	blood
6	chr7:102908600-102911600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: