Variant report

Variant	rs58192762
Chromosome Location	chr7:102951595-102951596
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102714740..102716868-chr7:102950642..102953182,2	MCF-7	breast:
2	chr7:102949416..102952354-chr7:102981636..102984074,3	K562	blood:

Variant related genes	Relation type
ENSG00000161040	Chromatin interaction
ENSG00000170632	Chromatin interaction
ENSG00000105821	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10046531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10245037	1.00[AMR][1000 genomes]
rs10246237	1.00[AMR][1000 genomes]
rs10252006	1.00[AMR][1000 genomes]
rs10255884	1.00[AMR][1000 genomes]
rs10258184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259126	1.00[AMR][1000 genomes]
rs10271644	1.00[AMR][1000 genomes]
rs10273102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279918	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2079253	0.90[AFR][1000 genomes]
rs28399298	1.00[AMR][1000 genomes]
rs28482805	1.00[AMR][1000 genomes]
rs28605237	1.00[AMR][1000 genomes]
rs4480048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4612274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56703102	1.00[AMR][1000 genomes]
rs6944594	1.00[AMR][1000 genomes]
rs7794374	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv831084	chr7:102778908-102964970	Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102938400-102957000	Weak transcription	Spleen	Spleen
2	chr7:102938600-102957000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:102938600-102984200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:102938800-102957000	Weak transcription	Aorta	Aorta
5	chr7:102939000-102965200	Weak transcription	Right Ventricle	heart
6	chr7:102939000-102969200	Strong transcription	Fetal Muscle Trunk	muscle
7	chr7:102939200-102962000	Weak transcription	Right Atrium	heart
8	chr7:102939200-102967400	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:102939200-102968400	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr7:102939200-102968400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:102939200-102972400	Strong transcription	Fetal Thymus	thymus
12	chr7:102939400-102958800	Weak transcription	Gastric	stomach
13	chr7:102939400-102964800	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:102939400-102965600	Strong transcription	Fetal Lung	lung
15	chr7:102939400-102966800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:102939400-102967800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:102939400-102967800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:102939400-102968000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:102939400-102968000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr7:102939400-102968200	Strong transcription	Placenta	Placenta
21	chr7:102939400-102968200	Strong transcription	HSMM	muscle
22	chr7:102939400-102969800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:102939600-102963200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr7:102939600-102965400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr7:102939600-102966800	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr7:102939600-102968000	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:102939600-102968000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:102939600-102968000	Strong transcription	Fetal Intestine Large	intestine
29	chr7:102939600-102968000	Strong transcription	Fetal Muscle Leg	muscle
30	chr7:102939600-102968400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr7:102939600-102968400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:102939600-102968600	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:102939600-102969800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:102939600-102970000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:102939800-102952600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:102939800-102959600	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr7:102939800-102960600	Strong transcription	NH-A	brain
38	chr7:102939800-102960800	Strong transcription	Brain Germinal Matrix	brain
39	chr7:102939800-102962400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:102939800-102968000	Strong transcription	Adipose Nuclei	Adipose
41	chr7:102939800-102968000	Strong transcription	Osteobl	bone
42	chr7:102939800-102968200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:102939800-102968200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:102939800-102968200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:102939800-102969800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:102939800-102980800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:102939800-102984000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:102939800-102984200	Weak transcription	Stomach Mucosa	stomach
49	chr7:102940000-102956800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:102940000-102960400	Strong transcription	Primary B cells from cord blood	blood

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