Variant report
| Variant | rs1023652 |
|---|---|
| Chromosome Location | chr8:59420616-59420617 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:59412344..59414361-chr8:59418846..59420649,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000167910 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10104568 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs1023649 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs1023650 | 0.96[EUR][1000 genomes] |
| rs1023651 | 0.96[EUR][1000 genomes] |
| rs1050504 | 0.83[YRI][hapmap] |
| rs1125226 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs12541539 | 0.95[EUR][1000 genomes] |
| rs12543344 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13251096 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs13263039 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1427162 | 0.95[EUR][1000 genomes] |
| rs1582824 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs17263989 | 0.83[CHB][hapmap];0.89[JPT][hapmap] |
| rs1834733 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3903445 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs4573256 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4737501 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4738690 | 0.95[EUR][1000 genomes] |
| rs4738691 | 0.94[EUR][1000 genomes] |
| rs6984439 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7005296 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7016868 | 0.94[EUR][1000 genomes] |
| rs7833904 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs9297999 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890938 | chr8:59355053-59809785 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
