Variant report

Variant	rs1582824
Chromosome Location	chr8:59446454-59446455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59445891..59447570-chr8:59464985..59467075,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137575	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10085973	0.81[JPT][hapmap]
rs10090425	0.81[JPT][hapmap];0.85[YRI][hapmap]
rs10090964	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10099153	0.81[JPT][hapmap]
rs10099912	0.81[JPT][hapmap]
rs10102709	0.82[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10104292	0.93[GIH][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs10104568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10111052	0.81[JPT][hapmap]
rs10111506	0.82[ASN][1000 genomes]
rs10113750	0.82[CHB][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap]
rs1023649	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1023650	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1023651	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1023652	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10504256	0.81[JPT][hapmap]
rs1050488	0.85[GIH][hapmap]
rs1050504	0.83[GIH][hapmap]
rs1125226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11776003	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11783174	0.81[JPT][hapmap]
rs12541539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12543344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12674568	0.82[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12676593	0.81[JPT][hapmap]
rs12677290	0.93[GIH][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap]
rs12680996	0.82[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs13251066	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs13251096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13263039	0.92[EUR][1000 genomes]
rs1427162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1457042	0.85[CHB][hapmap]
rs16923562	0.82[ASN][1000 genomes]
rs16923564	0.82[ASN][1000 genomes]
rs1834733	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1991359	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2255834	0.84[TSI][hapmap]
rs2279460	0.83[GIH][hapmap]
rs2634527	0.85[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs28429491	0.82[ASN][1000 genomes]
rs28650441	0.83[ASN][1000 genomes]
rs3816846	0.83[GIH][hapmap]
rs3903445	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4282557	0.81[JPT][hapmap]
rs4400367	0.81[JPT][hapmap];0.85[YRI][hapmap]
rs4573256	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4579515	0.91[GIH][hapmap]
rs4737501	0.91[EUR][1000 genomes]
rs4738687	0.85[CHB][hapmap]
rs4738690	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4738691	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55774738	0.82[ASN][1000 genomes]
rs6471729	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6981601	0.84[ASW][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs6984439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6986129	0.82[ASN][1000 genomes]
rs6987187	0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7005296	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7009248	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7009374	0.82[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.83[ASN][1000 genomes]
rs7011095	0.81[JPT][hapmap]
rs7014398	0.82[ASN][1000 genomes]
rs7016868	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7817515	0.83[ASN][1000 genomes]
rs7825996	0.81[JPT][hapmap]
rs7827910	0.81[JPT][hapmap]
rs7833904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9297995	0.82[ASN][1000 genomes]
rs9297997	0.93[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs9297998	0.93[GIH][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap]
rs9297999	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv6212	chr8:59435671-59451750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59440400-59465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:59442400-59447200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:59442800-59446800	Weak transcription	Right Atrium	heart
4	chr8:59442800-59447600	Weak transcription	Gastric	stomach
5	chr8:59443000-59446600	Weak transcription	Left Ventricle	heart
6	chr8:59443000-59450800	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:59445400-59448000	Enhancers	Placenta	Placenta
8	chr8:59445800-59446600	Enhancers	Fetal Heart	heart
9	chr8:59445800-59447000	Enhancers	HSMMtube	muscle
10	chr8:59446000-59447400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:59446000-59447800	Enhancers	Fetal Muscle Trunk	muscle
12	chr8:59446200-59446600	Weak transcription	Right Ventricle	heart
13	chr8:59446400-59447000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:59446400-59448600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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