Variant report

Variant	rs3903445
Chromosome Location	chr8:59418342-59418343
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59417943..59419729-chr8:59466208..59468213,2	K562	blood:
2	chr8:59412171..59413812-chr8:59417308..59420098,2	K562	blood:

Variant related genes	Relation type
ENSG00000167910	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10090964	0.82[CHB][hapmap]
rs10102709	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap]
rs10104292	0.86[GIH][hapmap]
rs10104568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10113750	0.82[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap]
rs1023649	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1023650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1023651	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1023652	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1125226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11776003	0.81[CHB][hapmap]
rs12541539	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12543344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12674568	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap]
rs12677290	0.87[GIH][hapmap]
rs12680996	0.82[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap]
rs13251066	0.95[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs13251096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263039	0.96[EUR][1000 genomes]
rs1427162	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1457042	0.85[CHB][hapmap]
rs1582824	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1834733	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1991359	0.82[CHB][hapmap]
rs2634527	0.85[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.82[ASN][1000 genomes]
rs4573256	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4579515	0.85[GIH][hapmap]
rs4737501	0.93[EUR][1000 genomes]
rs4738687	0.85[CHB][hapmap]
rs4738690	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4738691	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471729	0.82[CHB][hapmap]
rs6981601	0.82[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.85[MEX][hapmap]
rs6984439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6987187	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs7005296	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7009248	0.82[CHB][hapmap]
rs7009374	0.82[CHB][hapmap]
rs7016868	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7833904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297997	0.87[GIH][hapmap];0.84[MEX][hapmap]
rs9297998	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3903445	TOX	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59411800-59418400	Weak transcription	Psoas Muscle	Psoas
2	chr8:59416200-59419000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:59417800-59419400	Weak transcription	Fetal Muscle Leg	muscle

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