Variant report
| Variant | rs4737501 |
|---|---|
| Chromosome Location | chr8:59428989-59428990 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:59427203..59429357-chr8:59463844..59466674,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000137575 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10104568 | 0.92[EUR][1000 genomes] |
| rs1023649 | 0.93[EUR][1000 genomes] |
| rs1023650 | 0.92[EUR][1000 genomes] |
| rs1023651 | 0.93[EUR][1000 genomes] |
| rs1023652 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1125226 | 0.93[EUR][1000 genomes] |
| rs12541539 | 0.92[EUR][1000 genomes] |
| rs12543344 | 0.92[EUR][1000 genomes] |
| rs13251096 | 0.93[EUR][1000 genomes] |
| rs13263039 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1427162 | 0.93[EUR][1000 genomes] |
| rs1582824 | 0.91[EUR][1000 genomes] |
| rs1834733 | 0.93[EUR][1000 genomes] |
| rs3903445 | 0.93[EUR][1000 genomes] |
| rs4573256 | 0.93[EUR][1000 genomes] |
| rs4738690 | 0.92[EUR][1000 genomes] |
| rs4738691 | 0.91[EUR][1000 genomes] |
| rs6984439 | 0.93[EUR][1000 genomes] |
| rs7005296 | 0.91[EUR][1000 genomes] |
| rs7016868 | 0.91[EUR][1000 genomes] |
| rs7833904 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890938 | chr8:59355053-59809785 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv971239 | chr8:59426165-59431020 | Enhancers Active TSS Weak transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
