Variant report

Variant	rs13251066
Chromosome Location	chr8:59417753-59417754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10104568	0.95[CHB][hapmap]
rs1023649	0.95[CHB][hapmap];0.87[CHD][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs1023650	0.95[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs1023651	0.83[ASN][1000 genomes]
rs1125226	0.95[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs12543344	0.95[CHB][hapmap]
rs13251096	0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1427162	0.95[CHB][hapmap]
rs1457042	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1582824	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs2634527	0.81[CHB][hapmap]
rs3903445	0.95[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs4573256	0.83[ASN][1000 genomes]
rs4738687	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6984439	0.95[CHB][hapmap]
rs6987187	0.81[CHB][hapmap]
rs7833904	0.95[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs8192879	1.00[CEU][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59411800-59418400	Weak transcription	Psoas Muscle	Psoas
2	chr8:59416200-59419000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:59416400-59417800	Enhancers	Fetal Muscle Leg	muscle
4	chr8:59416400-59418200	Enhancers	HSMMtube	muscle
5	chr8:59417000-59418200	Enhancers	Stomach Smooth Muscle	stomach
6	chr8:59417400-59417800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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