Variant report

Variant	rs1457042
Chromosome Location	chr8:59410632-59410633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10104568	0.86[CHB][hapmap]
rs1023649	0.85[CHB][hapmap]
rs1023650	0.86[CHB][hapmap]
rs1125226	0.86[CHB][hapmap]
rs12543344	0.86[CHB][hapmap]
rs13251066	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13251096	0.83[CHB][hapmap]
rs1427162	0.86[CHB][hapmap]
rs1582824	0.85[CHB][hapmap]
rs3903445	0.85[CHB][hapmap]
rs4738687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984439	0.86[CHB][hapmap]
rs7833904	0.86[CHB][hapmap]
rs8192879	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59409400-59411400	Flanking Active TSS	Liver	Liver
2	chr8:59410000-59415200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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