Variant report

Variant	rs10237362
Chromosome Location	chr7:78000511-78000512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10232267	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10233862	0.84[EUR][1000 genomes]
rs10241441	0.84[EUR][1000 genomes]
rs13239395	0.82[EUR][1000 genomes]
rs16886004	0.86[AFR][1000 genomes]
rs17150624	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17150625	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17150631	0.89[AFR][1000 genomes]
rs17150684	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1968128	0.87[EUR][1000 genomes]
rs2109393	0.83[AFR][1000 genomes]
rs28464190	0.84[AFR][1000 genomes]
rs35196628	0.92[EUR][1000 genomes]
rs6949484	0.86[EUR][1000 genomes]
rs6966363	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607654	chr7:77537964-78014329	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:77972800-78001200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:77993800-78001200	Weak transcription	Brain Anterior Caudate	brain
3	chr7:77998400-78001000	Enhancers	Fetal Brain Female	brain
4	chr7:77998800-78000600	Enhancers	Fetal Brain Male	brain
5	chr7:77999600-78000800	Enhancers	Brain Germinal Matrix	brain
6	chr7:78000200-78000600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:78000200-78000600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:78000400-78000600	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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