Variant report

Variant	rs2109393
Chromosome Location	chr7:78034494-78034495
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10232267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10233862	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10237362	0.83[AFR][1000 genomes]
rs10241441	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10251797	0.86[ASN][1000 genomes]
rs12705417	0.83[ASN][1000 genomes]
rs13227396	0.83[ASN][1000 genomes]
rs13228296	0.83[ASN][1000 genomes]
rs13239395	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16886004	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17150624	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17150625	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17150631	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17150684	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1968128	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005549	0.90[ASN][1000 genomes]
rs28394402	0.83[ASN][1000 genomes]
rs28464190	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35025607	0.83[ASN][1000 genomes]
rs35094689	0.83[ASN][1000 genomes]
rs35196628	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4469390	0.90[ASN][1000 genomes]
rs6949484	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6966363	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78029000-78034800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:78031600-78036800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:78031800-78037000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:78032000-78036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:78032000-78036600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:78032000-78036600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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