Variant report

Variant	rs13239395
Chromosome Location	chr7:78030983-78030984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78019426..78023197-chr7:78030740..78033755,3	K562	blood:
2	chr7:78028994..78032808-chr7:78037424..78041086,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10232267	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10233862	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10237362	0.82[EUR][1000 genomes]
rs10241441	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10251797	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12705417	0.82[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13227396	0.82[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13228296	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16886004	0.82[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17150624	0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17150625	0.94[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17150631	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17150684	0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1968128	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2005549	0.97[ASN][1000 genomes]
rs2109393	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28394402	0.90[ASN][1000 genomes]
rs28464190	0.90[ASN][1000 genomes]
rs35025607	0.90[ASN][1000 genomes]
rs35094689	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35196628	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4469390	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6949484	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966363	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78026800-78031400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:78027600-78032200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:78027800-78031800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:78028000-78032000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:78028400-78031200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:78028400-78031800	Enhancers	Fetal Heart	heart
9	chr7:78029000-78034800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:78029000-78045000	Weak transcription	Brain Anterior Caudate	brain
11	chr7:78029000-78045200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:78029400-78031400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:78029400-78031600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:78029600-78044400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:78030000-78031400	Active TSS	Ovary	ovary
16	chr7:78030000-78031800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr7:78030600-78032000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:78030800-78031400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:78030800-78032000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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