Variant report

Variant	rs17150684
Chromosome Location	chr7:78028398-78028399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10232267	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10233862	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10237362	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10241441	0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10251797	0.82[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12705417	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13227396	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13228296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13239395	0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16886004	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MKK][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17150624	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.80[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17150625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17150631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1968128	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2005549	1.00[ASN][1000 genomes]
rs2109393	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28394402	0.93[ASN][1000 genomes]
rs28464190	0.88[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35025607	0.93[ASN][1000 genomes]
rs35094689	0.93[ASN][1000 genomes]
rs35196628	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4469390	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6949484	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966363	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
3	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:78023600-78028600	Weak transcription	Ovary	ovary
5	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:78025000-78028800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr7:78026000-78028400	Weak transcription	Fetal Heart	heart
8	chr7:78026600-78029000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:78026800-78029000	Enhancers	Brain Substantia Nigra	brain
10	chr7:78026800-78029400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:78026800-78031400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:78027200-78029200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:78027400-78029000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:78027400-78030000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:78027600-78028400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr7:78027600-78028400	Weak transcription	Brain Anterior Caudate	brain
17	chr7:78027600-78028800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:78027600-78029200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:78027600-78032200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:78027800-78029200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:78027800-78031800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:78028000-78028400	Weak transcription	HSMMtube	muscle
23	chr7:78028000-78028800	Enhancers	Brain Hippocampus Middle	brain
24	chr7:78028000-78032000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:78028200-78028800	Enhancers	HSMM	muscle
26	chr7:78028200-78029000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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