Variant report

Variant	rs10237790
Chromosome Location	chr7:14542836-14542837
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10251573	0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264038	0.82[ASW][hapmap];0.90[CEU][hapmap];0.84[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10267996	0.90[CHB][hapmap]
rs10271285	0.80[EUR][1000 genomes]
rs10486031	0.82[TSI][hapmap]
rs10499444	0.80[CEU][hapmap]
rs10950525	0.83[EUR][1000 genomes]
rs10950526	0.83[EUR][1000 genomes]
rs12531006	0.84[EUR][1000 genomes]
rs12531250	0.82[TSI][hapmap]
rs12532388	0.84[EUR][1000 genomes]
rs12533433	0.84[EUR][1000 genomes]
rs12533779	0.83[GIH][hapmap]
rs12538874	0.84[EUR][1000 genomes]
rs12540646	0.84[EUR][1000 genomes]
rs12540892	0.84[EUR][1000 genomes]
rs1367775	0.84[EUR][1000 genomes]
rs17168175	0.84[EUR][1000 genomes]
rs17168243	0.80[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap]
rs171926	0.80[EUR][1000 genomes]
rs1835676	0.83[EUR][1000 genomes]
rs1835677	0.83[EUR][1000 genomes]
rs183808	0.83[EUR][1000 genomes]
rs1897301	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1991686	0.89[CHB][hapmap]
rs1991687	0.84[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap]
rs1991688	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1991689	0.90[CHB][hapmap]
rs2116317	0.84[EUR][1000 genomes]
rs2116318	0.84[EUR][1000 genomes]
rs2163509	0.84[EUR][1000 genomes]
rs58759714	0.84[EUR][1000 genomes]
rs59778011	0.83[EUR][1000 genomes]
rs60294470	0.84[EUR][1000 genomes]
rs62443273	0.83[EUR][1000 genomes]
rs6461105	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7778934	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10237790	ETV1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14542400-14543600	Enhancers	Brain Germinal Matrix	brain
2	chr7:14542400-14544800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:14542400-14545400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:14542400-14545600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:14542600-14545000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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