Variant report
| Variant | rs10264038 |
|---|---|
| Chromosome Location | chr7:14538449-14538450 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10237790 | 0.82[ASW][hapmap];0.90[CEU][hapmap];0.84[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10251573 | 0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10271285 | 0.88[GIH][hapmap] |
| rs10486031 | 0.82[GIH][hapmap] |
| rs11525791 | 0.88[GIH][hapmap] |
| rs12531006 | 0.81[EUR][1000 genomes] |
| rs12531250 | 0.88[GIH][hapmap] |
| rs12532388 | 0.81[EUR][1000 genomes] |
| rs12533433 | 0.81[EUR][1000 genomes] |
| rs12538874 | 0.82[GIH][hapmap];0.81[EUR][1000 genomes] |
| rs12540646 | 0.81[EUR][1000 genomes] |
| rs12540892 | 0.81[EUR][1000 genomes] |
| rs1367775 | 0.81[EUR][1000 genomes] |
| rs16878192 | 0.82[GIH][hapmap] |
| rs17168175 | 0.81[EUR][1000 genomes] |
| rs17168243 | 0.81[CHD][hapmap] |
| rs1897301 | 0.89[JPT][hapmap] |
| rs1991687 | 0.81[CHD][hapmap];0.83[GIH][hapmap] |
| rs1991688 | 0.84[JPT][hapmap] |
| rs2116317 | 0.81[EUR][1000 genomes] |
| rs2116318 | 0.81[EUR][1000 genomes] |
| rs2163509 | 0.81[EUR][1000 genomes] |
| rs58759714 | 0.81[EUR][1000 genomes] |
| rs60294470 | 0.81[EUR][1000 genomes] |
| rs6461105 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7778934 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9690425 | 0.84[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv1800100 | chr7:14511454-14564068 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14520400-14542400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
