Variant report

Variant	rs9690425
Chromosome Location	chr7:14485818-14485819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10231750	0.81[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs10235540	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs10244094	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10245171	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs10245903	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10247453	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10256038	0.80[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10260659	0.82[CEU][hapmap]
rs10263131	1.00[CEU][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10264038	0.84[CHB][hapmap]
rs1030578	0.85[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10499441	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10499442	0.82[CEU][hapmap]
rs11762226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11767969	0.88[CEU][hapmap]
rs11771647	0.88[CEU][hapmap]
rs11771951	0.92[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11982590	0.90[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs12154477	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12666867	0.85[CEU][hapmap]
rs12670458	0.88[CEU][hapmap]
rs12674261	0.81[CEU][hapmap]
rs12699617	0.92[CEU][hapmap]
rs12699618	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12699619	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699621	0.92[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12699622	0.81[CEU][hapmap]
rs12699624	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs12699625	0.85[CHB][hapmap]
rs12699626	0.89[CEU][hapmap]
rs12699627	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12699628	0.84[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12699629	0.81[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs12699635	0.92[CEU][hapmap]
rs12699636	0.83[CEU][hapmap]
rs13223986	0.83[CEU][hapmap];0.87[YRI][hapmap]
rs13236153	0.87[CEU][hapmap]
rs13238777	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13438642	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs1367780	0.88[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs1367781	0.84[CEU][hapmap]
rs1367783	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs1431513	0.81[JPT][hapmap]
rs1431520	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs1431521	0.82[CEU][hapmap]
rs1431525	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs1431526	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1431527	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1431532	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1541874	1.00[CEU][hapmap]
rs1560479	0.80[CEU][hapmap]
rs1560481	0.81[JPT][hapmap]
rs1560482	0.82[JPT][hapmap]
rs1978671	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1991685	0.81[CEU][hapmap]
rs2116314	0.84[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap]
rs2116315	0.90[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2116319	0.88[CEU][hapmap];0.89[CHB][hapmap]
rs2884348	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823843	0.81[CEU][hapmap]
rs4370419	0.82[CEU][hapmap]
rs4607508	0.90[EUR][1000 genomes]
rs4719405	0.97[EUR][1000 genomes]
rs4719406	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4719407	0.85[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs4719409	0.85[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4721335	1.00[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4721336	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4721337	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4721338	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs4721342	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs6461102	1.00[CEU][hapmap]
rs6461104	0.81[CEU][hapmap]
rs6943928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6959924	0.82[CEU][hapmap]
rs7777868	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7782805	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7783911	0.92[EUR][1000 genomes]
rs7793372	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs7794554	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7807072	0.82[CEU][hapmap]
rs9639203	0.81[CEU][hapmap]
rs987449	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14485600-14486600	Enhancers	Fetal Intestine Small	intestine

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