Variant report

Variant	rs10256038
Chromosome Location	chr7:14544187-14544188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10231750	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10244094	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs10245171	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs10245903	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10260522	0.81[CEU][hapmap]
rs10263131	0.81[CEU][hapmap]
rs10270441	1.00[CEU][hapmap]
rs10274270	0.82[CEU][hapmap]
rs10274418	0.82[CEU][hapmap]
rs1030578	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11505395	0.82[CEU][hapmap]
rs11762226	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11768166	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11771951	0.81[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11982590	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12154477	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12666867	0.81[CEU][hapmap]
rs12670458	0.85[CEU][hapmap]
rs12699618	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs12699619	0.94[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12699621	0.81[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12699623	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12699624	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs12699625	0.84[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs12699627	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12699628	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12699629	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12699636	0.96[CEU][hapmap]
rs12699637	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs13243691	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs13438642	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1367780	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs1367781	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1367783	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1431526	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs1431527	0.81[CEU][hapmap]
rs1431538	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs1541874	0.81[CEU][hapmap]
rs1978671	0.93[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2116314	0.84[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2116315	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2116319	0.85[CEU][hapmap];0.94[CHB][hapmap]
rs2357960	0.81[CEU][hapmap]
rs2884348	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs34862028	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34919207	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4607508	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4719407	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4719409	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs4721342	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6461102	0.81[CEU][hapmap]
rs6943928	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs7777868	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7782805	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7793372	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7794554	0.83[ASN][1000 genomes]
rs9690425	0.80[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14542400-14544800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:14542400-14545400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:14542400-14545600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:14542600-14545000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:14543000-14544200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:14543200-14544200	Enhancers	Brain Angular Gyrus	brain
7	chr7:14543200-14544800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:14543400-14544200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:14543400-14544200	Enhancers	Brain Hippocampus Middle	brain
10	chr7:14543400-14544200	Enhancers	Brain Substantia Nigra	brain
11	chr7:14543400-14544400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:14543400-14544800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:14543600-14544200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:14543600-14544200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:14543600-14544400	Weak transcription	Brain Germinal Matrix	brain
16	chr7:14543600-14544800	Enhancers	Fetal Heart	heart
17	chr7:14543800-14544200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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