Variant report

Variant	rs7794554
Chromosome Location	chr7:14518019-14518020
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10247453	0.94[EUR][1000 genomes]
rs10256038	0.83[ASN][1000 genomes]
rs10263131	0.93[EUR][1000 genomes]
rs1030578	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10499441	0.94[EUR][1000 genomes]
rs11768166	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11771951	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12154477	0.80[ASN][1000 genomes]
rs12699619	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12699621	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12699623	0.81[ASN][1000 genomes]
rs12699627	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12699628	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13238777	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13438642	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1367780	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1367781	0.81[EUR][1000 genomes]
rs1431532	0.92[EUR][1000 genomes]
rs1978671	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2116314	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2116315	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2884348	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34862028	0.82[ASN][1000 genomes]
rs34919207	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4607508	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4719405	0.94[EUR][1000 genomes]
rs4719406	0.95[EUR][1000 genomes]
rs4719407	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4721335	0.94[EUR][1000 genomes]
rs4721336	0.94[EUR][1000 genomes]
rs4721337	0.94[EUR][1000 genomes]
rs6943928	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7777868	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7782805	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7783911	0.97[EUR][1000 genomes]
rs7793372	0.85[EUR][1000 genomes]
rs9690425	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14517800-14520400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:14518000-14520400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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