Variant report
| Variant | rs4719405 |
|---|---|
| Chromosome Location | chr7:14498470-14498471 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10247453 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10263131 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1030578 | 0.81[EUR][1000 genomes] |
| rs10499441 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11771951 | 0.90[EUR][1000 genomes] |
| rs12699619 | 0.98[EUR][1000 genomes] |
| rs12699621 | 0.91[EUR][1000 genomes] |
| rs13238777 | 0.99[EUR][1000 genomes] |
| rs1367780 | 0.82[EUR][1000 genomes] |
| rs1431532 | 0.97[EUR][1000 genomes] |
| rs1978671 | 0.94[EUR][1000 genomes] |
| rs2884348 | 0.94[EUR][1000 genomes] |
| rs4607508 | 0.91[EUR][1000 genomes] |
| rs4719406 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4719407 | 0.82[EUR][1000 genomes] |
| rs4721335 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4721336 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4721337 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6943928 | 0.97[EUR][1000 genomes] |
| rs7777868 | 0.91[EUR][1000 genomes] |
| rs7782805 | 0.92[EUR][1000 genomes] |
| rs7783911 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7793372 | 0.80[EUR][1000 genomes] |
| rs7794554 | 0.94[EUR][1000 genomes] |
| rs9690425 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14498000-14498600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
