Variant report

Variant	rs6943928
Chromosome Location	chr7:14486673-14486674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10231750	0.81[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap]
rs10235540	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs10244094	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs10245171	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs10245903	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs10247453	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.98[EUR][1000 genomes]
rs10256038	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10263131	1.00[CEU][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes]
rs1030578	0.85[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10499441	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11762226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11767969	0.85[CEU][hapmap]
rs11771647	0.85[CEU][hapmap]
rs11771951	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs11982590	0.90[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap]
rs12154477	0.80[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12666867	0.82[CEU][hapmap]
rs12670458	0.89[CEU][hapmap]
rs12699617	0.92[CEU][hapmap]
rs12699618	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12699619	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699621	0.92[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12699624	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs12699625	0.84[CHB][hapmap]
rs12699626	0.86[CEU][hapmap]
rs12699627	0.85[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs12699628	0.84[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12699629	0.81[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs12699635	0.89[CEU][hapmap]
rs12699636	0.84[CEU][hapmap]
rs13223986	0.84[CEU][hapmap];0.86[YRI][hapmap]
rs13236153	0.83[CEU][hapmap]
rs13238777	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13243691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13438642	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs1367780	0.88[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs1367781	0.84[CEU][hapmap]
rs1367783	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs1431513	0.81[JPT][hapmap]
rs1431520	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs1431525	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap]
rs1431526	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1431527	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1431532	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1431538	0.80[CEU][hapmap]
rs1541874	1.00[CEU][hapmap]
rs1560481	0.81[JPT][hapmap]
rs1560482	0.82[JPT][hapmap]
rs1978671	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116314	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs2116315	0.90[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs2116319	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs2884348	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4607508	0.90[EUR][1000 genomes]
rs4719405	0.97[EUR][1000 genomes]
rs4719406	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4719407	0.85[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs4719409	0.85[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4721335	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4721336	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4721337	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4721338	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs4721342	0.80[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs6461102	1.00[CEU][hapmap]
rs7777868	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7782805	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7783911	0.92[EUR][1000 genomes]
rs7793372	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs7794554	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9690425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14486200-14486800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr7:14486200-14487600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr7:14486400-14486800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:14486400-14486800	Enhancers	Fetal Intestine Large	intestine
5	chr7:14486400-14487600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:14486600-14487000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:14486600-14487200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:14486600-14487400	Enhancers	Primary T cells from cord blood	blood

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