Variant report

Variant	rs12699617
Chromosome Location	chr7:14491734-14491735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10235540	0.92[CEU][hapmap]
rs10247453	0.88[CEU][hapmap];0.80[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs10260659	0.81[CEU][hapmap]
rs10263131	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs1030578	0.80[EUR][1000 genomes]
rs10499441	0.92[CEU][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10499442	0.89[CEU][hapmap]
rs11762226	0.92[CEU][hapmap]
rs11767890	0.85[CEU][hapmap]
rs11767969	0.88[CEU][hapmap]
rs11771647	0.88[CEU][hapmap]
rs11771951	0.85[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11982590	0.85[CEU][hapmap]
rs12669548	0.85[CEU][hapmap]
rs12670458	0.81[CEU][hapmap]
rs12674261	0.88[CEU][hapmap]
rs12699618	0.92[CEU][hapmap]
rs12699619	0.92[CEU][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699621	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12699622	0.88[CEU][hapmap]
rs12699626	0.88[CEU][hapmap]
rs12699635	0.84[CEU][hapmap]
rs13236153	0.86[CEU][hapmap]
rs13238777	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243691	0.92[CEU][hapmap]
rs1367780	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs1431520	0.88[CEU][hapmap]
rs1431521	0.89[CEU][hapmap]
rs1431525	0.92[CEU][hapmap]
rs1431526	0.92[CEU][hapmap]
rs1431527	0.92[CEU][hapmap]
rs1431528	0.85[CEU][hapmap]
rs1431532	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1541874	0.92[CEU][hapmap]
rs1560576	0.84[CEU][hapmap]
rs1897300	0.85[CEU][hapmap]
rs196751	0.85[CEU][hapmap]
rs196757	0.82[CEU][hapmap]
rs1978671	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1991685	0.88[CEU][hapmap]
rs2116315	0.81[CEU][hapmap]
rs2116319	0.81[CEU][hapmap]
rs2884348	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3823843	0.88[CEU][hapmap]
rs4370419	0.89[CEU][hapmap]
rs4607508	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4719405	0.98[EUR][1000 genomes]
rs4719406	0.91[CEU][hapmap];0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4719407	0.81[EUR][1000 genomes]
rs4721335	0.96[CEU][hapmap];0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4721336	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4721337	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4721338	0.92[CEU][hapmap]
rs6461102	0.92[CEU][hapmap]
rs6461104	0.88[CEU][hapmap]
rs6943928	0.92[CEU][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6958691	0.81[CEU][hapmap]
rs7777868	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7782805	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7783911	0.93[EUR][1000 genomes]
rs7794554	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7807072	0.89[CEU][hapmap]
rs9639203	0.80[CEU][hapmap]
rs9690425	0.92[CEU][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987448	0.85[CEU][hapmap]
rs987449	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links