Variant report

Variant	rs7807072
Chromosome Location	chr7:14497763-14497764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:14028848..14029461-chr7:14497211..14497977,2	MCF-7	breast:
2	chr7:13564462..13565362-chr7:14497193..14498173,5	MCF-7	breast:
3	chr7:13934709..13935267-chr7:14497324..14498029,2	MCF-7	breast:
4	chr7:13934057..13934906-chr7:14497131..14498025,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006468	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10236653	0.88[CEU][hapmap]
rs10237359	0.92[EUR][1000 genomes]
rs10245826	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10260522	0.89[CEU][hapmap]
rs10266998	0.85[EUR][1000 genomes]
rs10274270	0.89[CEU][hapmap]
rs10274418	0.87[CEU][hapmap]
rs10274552	0.81[CEU][hapmap]
rs10499442	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10950530	0.83[EUR][1000 genomes]
rs11505395	0.89[CEU][hapmap]
rs11505396	0.85[CEU][hapmap]
rs11767890	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs11767969	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs11771647	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs11980816	0.82[CEU][hapmap];0.81[YRI][hapmap]
rs12669548	0.96[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12674261	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12699617	0.89[CEU][hapmap]
rs12699622	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12699626	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs12699635	0.82[CEU][hapmap]
rs12699641	0.89[CEU][hapmap]
rs13221160	0.81[EUR][1000 genomes]
rs13232496	0.86[CEU][hapmap]
rs13236153	0.83[CEU][hapmap]
rs1431521	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1431528	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1431532	0.85[CEU][hapmap]
rs1560576	0.92[CEU][hapmap]
rs1835675	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1897300	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs196751	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs196757	0.89[CEU][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1991685	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2052980	0.85[CEU][hapmap]
rs2357960	0.89[CEU][hapmap]
rs3823843	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4370419	1.00[CEU][hapmap]
rs4721335	0.81[CEU][hapmap]
rs4721343	0.83[CEU][hapmap]
rs4721345	0.86[CEU][hapmap]
rs6461104	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6958607	0.86[CEU][hapmap]
rs6958691	0.92[CEU][hapmap]
rs6979012	0.86[CEU][hapmap]
rs6979330	0.86[CEU][hapmap]
rs6980167	0.86[CEU][hapmap]
rs7777633	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7783571	0.92[EUR][1000 genomes]
rs7794432	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7794969	0.84[EUR][1000 genomes]
rs7800703	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7801624	0.82[EUR][1000 genomes]
rs7802759	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9690425	0.82[CEU][hapmap]
rs987448	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs987449	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14497600-14498200	Enhancers	Brain Germinal Matrix	brain

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