Variant report

Variant	rs12669548
Chromosome Location	chr7:14526227-14526228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10236653	0.92[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10237359	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10245826	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10260522	0.84[CEU][hapmap]
rs10274270	0.85[CEU][hapmap]
rs10274418	0.82[CEU][hapmap]
rs10274552	0.85[CEU][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap]
rs10499442	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10950530	0.80[EUR][1000 genomes]
rs11505395	0.85[CEU][hapmap]
rs11505396	0.81[CEU][hapmap]
rs11767890	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs11767969	0.80[CEU][hapmap]
rs11771647	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs11980816	0.85[CEU][hapmap];0.82[GIH][hapmap]
rs12674261	0.96[CEU][hapmap];0.96[GIH][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes]
rs12699617	0.85[CEU][hapmap]
rs12699622	0.96[CEU][hapmap];0.96[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs12699626	0.81[CEU][hapmap]
rs12699641	0.85[CEU][hapmap]
rs13221160	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13232496	0.81[CEU][hapmap]
rs1431521	0.96[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1431528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1431531	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1431532	0.81[CEU][hapmap]
rs1560576	0.96[CEU][hapmap]
rs182034	0.81[CEU][hapmap]
rs1835675	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1897300	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs196751	0.86[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.84[TSI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs196757	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1991685	0.96[CEU][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2052979	0.81[CEU][hapmap]
rs2052980	0.88[CEU][hapmap]
rs2357960	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs3823843	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4370419	0.96[CEU][hapmap]
rs4721343	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4721345	0.81[CEU][hapmap]
rs6461104	0.86[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6958607	0.81[CEU][hapmap]
rs6958691	0.88[CEU][hapmap]
rs6979012	0.81[CEU][hapmap]
rs6979330	0.81[CEU][hapmap]
rs6980167	0.81[CEU][hapmap]
rs7777633	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7783571	0.88[EUR][1000 genomes]
rs7794432	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7800703	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7802759	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7806877	0.83[CEU][hapmap]
rs7807072	0.96[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs987448	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs987449	0.86[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14520200-14527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:14520400-14542400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links