Variant report

Variant	rs4721343
Chromosome Location	chr7:14548030-14548031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10236653	0.85[CEU][hapmap];0.88[CHB][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10245826	0.84[EUR][1000 genomes]
rs10260522	0.92[CEU][hapmap]
rs10260659	0.83[CEU][hapmap]
rs10266998	0.82[EUR][1000 genomes]
rs10274270	0.93[CEU][hapmap]
rs10274418	0.91[CEU][hapmap]
rs10274552	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10499442	0.83[CEU][hapmap]
rs10950530	0.84[EUR][1000 genomes]
rs11505395	0.93[CEU][hapmap]
rs11505396	0.89[CEU][hapmap]
rs11767890	0.86[CEU][hapmap]
rs12669548	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs12674261	0.82[CEU][hapmap]
rs12699622	0.82[CEU][hapmap]
rs12699641	0.88[CHB][hapmap]
rs13221160	0.83[EUR][1000 genomes]
rs13232496	0.89[CEU][hapmap]
rs13236153	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs1431521	0.83[CEU][hapmap]
rs1431528	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs1431531	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1560576	0.82[CEU][hapmap]
rs1897300	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs196751	0.85[CEU][hapmap]
rs1991685	0.82[CEU][hapmap]
rs2163508	0.89[EUR][1000 genomes]
rs2357960	0.92[CEU][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs3823843	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs4370419	0.83[CEU][hapmap]
rs4721345	0.89[CEU][hapmap]
rs6461104	0.82[CEU][hapmap]
rs6956840	0.85[CEU][hapmap]
rs6958607	0.89[CEU][hapmap]
rs6958691	0.82[CEU][hapmap]
rs6979012	0.89[CEU][hapmap]
rs6979330	0.89[CEU][hapmap]
rs6980167	0.89[CEU][hapmap]
rs7777633	0.85[EUR][1000 genomes]
rs7794432	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7794969	0.84[EUR][1000 genomes]
rs7801624	0.85[EUR][1000 genomes]
rs7807072	0.83[CEU][hapmap]
rs9639203	0.82[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs9639204	0.90[EUR][1000 genomes]
rs987448	0.86[CEU][hapmap]
rs987449	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14544600-14548400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:14546200-14548400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:14546800-14548200	Enhancers	Fetal Heart	heart
4	chr7:14547200-14548200	Enhancers	HMEC	breast
5	chr7:14547200-14548800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:14548000-14551400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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