Variant report

Variant	rs10274552
Chromosome Location	chr7:14559190-14559191
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10236653	0.80[ASW][hapmap];0.84[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10245826	0.82[EUR][1000 genomes]
rs10260522	0.92[CEU][hapmap]
rs10260659	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs10266998	0.81[EUR][1000 genomes]
rs10274270	0.92[CEU][hapmap]
rs10274418	0.91[CEU][hapmap]
rs10499442	0.82[CEU][hapmap]
rs10950530	0.83[EUR][1000 genomes]
rs11505395	0.92[CEU][hapmap]
rs11505396	0.89[CEU][hapmap]
rs11767890	0.85[CEU][hapmap]
rs11771647	0.89[GIH][hapmap];0.82[TSI][hapmap]
rs12669548	0.85[CEU][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs12674261	0.82[CEU][hapmap];0.80[GIH][hapmap]
rs12699622	0.82[CEU][hapmap];0.80[GIH][hapmap];0.80[TSI][hapmap]
rs12699641	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs13221160	0.81[EUR][1000 genomes]
rs13232496	0.88[CEU][hapmap]
rs13236153	0.81[EUR][1000 genomes]
rs1431521	0.82[CEU][hapmap]
rs1431528	0.85[CEU][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs1431531	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1560479	0.91[GIH][hapmap];0.82[TSI][hapmap]
rs1560576	0.80[CEU][hapmap]
rs1897300	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs196751	0.85[CEU][hapmap];0.80[GIH][hapmap]
rs1991685	0.82[CEU][hapmap];0.80[GIH][hapmap]
rs2052979	0.85[CEU][hapmap]
rs2163508	0.87[EUR][1000 genomes]
rs2357960	0.92[CEU][hapmap];0.93[GIH][hapmap];0.80[TSI][hapmap];0.88[EUR][1000 genomes]
rs3823843	0.82[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.84[ASN][1000 genomes]
rs4370419	0.82[CEU][hapmap]
rs4721343	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4721345	0.88[CEU][hapmap]
rs6461104	0.82[CEU][hapmap]
rs6956840	0.88[CEU][hapmap]
rs6958607	0.88[CEU][hapmap]
rs6958691	0.80[CEU][hapmap]
rs6979012	0.88[CEU][hapmap]
rs6979330	0.88[CEU][hapmap]
rs6980167	0.88[CEU][hapmap]
rs7777633	0.83[EUR][1000 genomes]
rs7794432	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7794969	0.82[EUR][1000 genomes]
rs7801624	0.83[EUR][1000 genomes]
rs7806877	0.87[CEU][hapmap]
rs7807072	0.81[CEU][hapmap]
rs9639203	0.82[CEU][hapmap];0.93[GIH][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs9639204	0.88[EUR][1000 genomes]
rs987448	0.85[CEU][hapmap]
rs987449	0.82[CEU][hapmap];0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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