Variant report

Variant	rs1560479
Chromosome Location	chr7:14567052-14567053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10231750	0.81[CEU][hapmap]
rs10236653	0.85[GIH][hapmap];0.81[TSI][hapmap]
rs10245826	0.90[EUR][1000 genomes]
rs10260522	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10260659	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs10266998	0.87[EUR][1000 genomes]
rs10274270	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10274418	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10274552	0.91[GIH][hapmap];0.82[TSI][hapmap]
rs10499442	0.93[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10950530	0.89[EUR][1000 genomes]
rs11505395	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11505396	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11767890	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11767969	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11771647	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11982590	0.86[CEU][hapmap]
rs12154477	0.85[YRI][hapmap]
rs12666867	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs12674261	0.82[TSI][hapmap]
rs12699622	0.93[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12699625	0.80[CEU][hapmap]
rs12699626	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699629	0.81[CEU][hapmap]
rs12699635	0.88[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap]
rs13232496	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs13236153	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1431520	0.81[CEU][hapmap]
rs1431538	0.81[CEU][hapmap]
rs1978671	0.81[CEU][hapmap]
rs2163508	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2357960	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4721342	0.81[CEU][hapmap]
rs4721345	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6958607	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6958691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6959924	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6979012	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6979330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6980167	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7783571	0.80[EUR][1000 genomes]
rs7794969	0.87[EUR][1000 genomes]
rs7801624	0.89[EUR][1000 genomes]
rs9639203	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9639204	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9690425	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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