Variant report

Variant	rs12666867
Chromosome Location	chr7:14567871-14567872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10231750	0.86[CEU][hapmap]
rs10235540	0.82[CEU][hapmap]
rs10244094	0.82[CEU][hapmap]
rs10245826	0.85[EUR][1000 genomes]
rs10245903	0.81[CEU][hapmap]
rs10247453	0.82[CEU][hapmap]
rs10256038	0.81[CEU][hapmap]
rs10260522	0.85[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs10260659	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10263131	0.82[CEU][hapmap]
rs10266998	0.86[EUR][1000 genomes]
rs10270441	0.81[CEU][hapmap]
rs10274270	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10274418	0.83[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap]
rs1030578	0.82[CEU][hapmap]
rs10499441	0.82[CEU][hapmap]
rs10499442	0.88[CHB][hapmap]
rs10950530	0.88[EUR][1000 genomes]
rs11505395	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs11505396	0.82[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs11762226	0.82[CEU][hapmap]
rs11767890	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11767969	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11771647	0.88[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11982590	0.86[CEU][hapmap]
rs12154477	0.85[CEU][hapmap]
rs12699618	0.82[CEU][hapmap]
rs12699619	0.82[CEU][hapmap]
rs12699622	0.87[CHB][hapmap]
rs12699625	0.82[CEU][hapmap]
rs12699626	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12699629	0.85[CEU][hapmap]
rs12699635	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13232496	0.83[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs13236153	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13243691	0.82[CEU][hapmap]
rs13438642	0.84[CEU][hapmap]
rs1367782	0.81[CEU][hapmap]
rs1431525	0.82[CEU][hapmap]
rs1431526	0.81[CEU][hapmap]
rs1431527	0.82[CEU][hapmap]
rs1431532	0.82[CEU][hapmap]
rs1431538	0.85[CEU][hapmap]
rs1541874	0.82[CEU][hapmap]
rs1560479	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2116314	0.82[CEU][hapmap]
rs2163508	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2357960	0.85[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2884348	0.82[CEU][hapmap]
rs4721335	0.81[CEU][hapmap]
rs4721338	0.81[CEU][hapmap]
rs4721342	0.85[CEU][hapmap]
rs4721343	0.82[EUR][1000 genomes]
rs4721345	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6461102	0.82[CEU][hapmap]
rs6943928	0.82[CEU][hapmap]
rs6958607	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6958691	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs6959924	0.93[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6979012	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6979330	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6980167	0.83[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs7782805	0.82[CEU][hapmap]
rs7794969	0.85[EUR][1000 genomes]
rs7801624	0.89[EUR][1000 genomes]
rs9639203	0.96[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9639204	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9690425	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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