Variant report

Variant	rs9639203
Chromosome Location	chr7:14549462-14549463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10231750	0.82[CEU][hapmap]
rs10236653	0.87[GIH][hapmap]
rs10245826	0.89[EUR][1000 genomes]
rs10260522	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs10260659	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[LWK][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap]
rs10266998	0.90[EUR][1000 genomes]
rs10274270	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs10274418	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]
rs10274552	0.82[CEU][hapmap];0.93[GIH][hapmap];0.80[TSI][hapmap]
rs10499442	0.93[CHB][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10950530	0.91[EUR][1000 genomes]
rs11505395	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs11505396	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap]
rs11767890	0.81[CEU][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11767969	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11771647	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11982590	0.81[CEU][hapmap]
rs12154477	0.81[CEU][hapmap]
rs12666867	0.96[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs12674261	0.93[TSI][hapmap]
rs12699617	0.80[CEU][hapmap]
rs12699622	0.93[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12699624	0.81[ASW][hapmap]
rs12699626	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12699629	0.81[CEU][hapmap]
rs12699635	0.89[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs13232496	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs13236153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431532	0.81[CEU][hapmap]
rs1431538	0.82[CEU][hapmap]
rs1560479	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs1991685	0.91[TSI][hapmap]
rs2163508	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2357960	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3823843	0.91[TSI][hapmap]
rs4721335	0.80[CEU][hapmap]
rs4721342	0.82[CEU][hapmap]
rs4721343	0.82[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs4721345	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs6461104	0.84[TSI][hapmap]
rs6958607	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs6958691	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs6959924	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs6979012	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap]
rs6979330	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap]
rs6980167	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7783571	0.83[EUR][1000 genomes]
rs7794969	0.88[EUR][1000 genomes]
rs7801624	0.91[EUR][1000 genomes]
rs9639204	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9690425	0.81[CEU][hapmap]
rs987449	0.80[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14548000-14551400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:14549200-14550800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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