Variant report

Variant	rs12699624
Chromosome Location	chr7:14554729-14554730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10231750	0.80[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10235540	0.84[CEU][hapmap];0.90[TSI][hapmap]
rs10244094	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10245171	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10245903	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10247453	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs10256038	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10263131	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs10270441	0.92[CEU][hapmap]
rs1030578	0.87[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs10499441	0.84[CEU][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs11762226	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs11767890	0.82[CEU][hapmap]
rs11768166	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11771951	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11982590	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12154477	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12670458	0.88[CEU][hapmap]
rs12699618	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12699619	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs12699621	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12699623	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12699625	0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap]
rs12699627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12699628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12699629	0.80[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs12699635	0.81[CEU][hapmap]
rs12699636	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs12699637	0.92[CEU][hapmap];0.87[CHB][hapmap]
rs12699641	0.82[CEU][hapmap]
rs13238777	0.82[EUR][1000 genomes]
rs13243691	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs13438642	0.92[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1367780	0.85[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1367781	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1367783	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1431513	0.84[JPT][hapmap]
rs1431520	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs1431525	0.84[CEU][hapmap];0.90[TSI][hapmap]
rs1431526	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1431527	0.84[CEU][hapmap]
rs1431532	0.84[CEU][hapmap]
rs1431538	0.80[CEU][hapmap];0.88[CHB][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap]
rs1541874	0.84[CEU][hapmap]
rs1560481	0.84[JPT][hapmap]
rs1560482	0.84[JPT][hapmap]
rs1583184	0.81[CHB][hapmap]
rs1978671	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2116314	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2116315	0.93[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2116319	0.88[CEU][hapmap];0.87[CHB][hapmap];0.85[YRI][hapmap]
rs2163507	0.82[CHB][hapmap]
rs2884348	0.84[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34862028	0.89[ASN][1000 genomes]
rs34919207	0.89[ASN][1000 genomes]
rs4607508	0.88[EUR][1000 genomes]
rs4719405	0.81[EUR][1000 genomes]
rs4719406	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4719407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719409	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4721335	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs4721336	0.81[EUR][1000 genomes]
rs4721337	0.81[EUR][1000 genomes]
rs4721338	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs4721342	0.80[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6461102	0.84[CEU][hapmap]
rs6943928	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs6958691	0.81[CEU][hapmap]
rs7777868	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7782805	0.88[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7783911	0.83[EUR][1000 genomes]
rs7793372	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7794554	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9639203	0.81[ASW][hapmap]
rs9690425	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12699624	TMEM195	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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