Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10245171	0.81[CHB][hapmap]
rs11762226	0.81[JPT][hapmap]
rs11982590	0.88[JPT][hapmap]
rs12699618	0.81[JPT][hapmap]
rs12699619	0.81[JPT][hapmap]
rs12699624	0.84[JPT][hapmap]
rs12699625	0.86[JPT][hapmap]
rs12699637	0.82[JPT][hapmap]
rs13243691	0.81[JPT][hapmap]
rs1367783	0.81[CEU][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs1431513	0.90[ASW][hapmap];0.92[CEU][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1560482	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583184	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs1978671	0.80[JPT][hapmap]
rs2116319	0.84[JPT][hapmap]
rs2163507	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2884348	0.81[JPT][hapmap]
rs4719409	0.83[JPT][hapmap]
rs4721348	0.92[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6943928	0.81[JPT][hapmap]
rs7806743	0.89[ASN][1000 genomes]
rs9690425	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606284	chr7:14594236-14619026	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14595400-14601400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14596400-14597000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:14596400-14597200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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