Variant report

Variant	rs1367783
Chromosome Location	chr7:14594695-14594696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10231750	0.89[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs10244094	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs10245171	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs10245903	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs10256038	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1030578	0.85[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap]
rs11762226	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs11771951	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs11982590	0.90[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs12154477	0.88[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs12670458	0.81[CEU][hapmap]
rs12699618	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs12699619	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs12699621	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs12699624	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12699625	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12699627	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs12699628	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs12699629	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs12699645	0.88[ASW][hapmap];0.85[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs13243691	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs13438642	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1367780	0.81[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs1431526	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1431538	0.89[CEU][hapmap]
rs1560481	0.81[CEU][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs1560482	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1583184	0.81[CHB][hapmap]
rs1978671	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2116314	0.85[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap]
rs2116315	0.84[JPT][hapmap]
rs2116319	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs2163507	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2884348	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4719407	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4719409	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs4721342	0.89[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs6943928	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6975021	0.96[CEU][hapmap]
rs7782805	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs7793372	0.90[JPT][hapmap]
rs7806743	0.84[CHB][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9690425	0.88[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv518783	chr7:14594236-14596054	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv606284	chr7:14594236-14619026	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links