Variant report

Variant	rs13438642
Chromosome Location	chr7:14546584-14546585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10231750	0.88[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs10244094	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10245171	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10245903	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10256038	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10260522	0.84[CEU][hapmap]
rs10263131	0.81[CEU][hapmap]
rs10270441	1.00[CEU][hapmap]
rs10274270	0.85[CEU][hapmap]
rs10274418	0.86[CEU][hapmap]
rs1030578	0.84[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11505395	0.85[CEU][hapmap]
rs11505396	0.81[CEU][hapmap]
rs11762226	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs11768166	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11771951	0.86[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11982590	0.90[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs12154477	0.87[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12666867	0.84[CEU][hapmap]
rs12670458	0.81[CEU][hapmap]
rs12699618	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs12699619	0.85[CHB][hapmap]
rs12699621	0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12699623	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699624	0.92[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]
rs12699625	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs12699627	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12699628	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12699629	0.88[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs12699636	0.91[CEU][hapmap]
rs12699637	0.87[CEU][hapmap]
rs13232496	0.82[CEU][hapmap]
rs13243691	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs1367780	0.85[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367781	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1367783	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1431526	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1431527	0.81[CEU][hapmap]
rs1431532	0.80[CEU][hapmap]
rs1431538	0.88[CEU][hapmap]
rs1541874	0.81[CEU][hapmap]
rs1978671	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs2116314	0.84[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2116315	0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2116319	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs2357960	0.84[CEU][hapmap]
rs2884348	0.85[CHB][hapmap]
rs34862028	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34919207	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4607508	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4719407	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4719409	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs4721335	0.80[CEU][hapmap]
rs4721342	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4721345	0.82[CEU][hapmap]
rs6461102	0.81[CEU][hapmap]
rs6943928	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs6958607	0.82[CEU][hapmap]
rs6979012	0.82[CEU][hapmap]
rs6979330	0.81[CEU][hapmap]
rs6980167	0.82[CEU][hapmap]
rs7777868	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7782805	0.80[CEU][hapmap];0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs7793372	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7794554	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9690425	0.81[CEU][hapmap];0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14544600-14548400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:14545400-14547200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:14545600-14547200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:14545600-14547200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:14546200-14546600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:14546200-14547200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:14546200-14547200	Weak transcription	NHEK	skin
8	chr7:14546200-14548400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:14546400-14546600	Active TSS	Fetal Heart	heart

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