Variant report

Variant	rs12699636
Chromosome Location	chr7:14568586-14568587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10235540	0.84[CEU][hapmap];0.88[TSI][hapmap]
rs10244094	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs10245171	0.81[CHB][hapmap]
rs10245903	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs10256038	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10263131	0.84[CEU][hapmap]
rs10270441	0.92[CEU][hapmap]
rs10499441	0.84[CEU][hapmap];0.88[TSI][hapmap]
rs11762226	0.84[CEU][hapmap]
rs11767890	0.81[CEU][hapmap]
rs11768166	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11771951	0.84[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs11982590	0.85[CEU][hapmap]
rs12154477	0.81[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12670458	0.88[CEU][hapmap]
rs12699618	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs12699619	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[TSI][hapmap]
rs12699621	0.84[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs12699623	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12699624	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs12699627	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12699628	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12699637	0.92[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs12699641	0.81[CEU][hapmap]
rs13243691	0.84[CEU][hapmap]
rs13438642	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1367780	0.88[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1367781	1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1431513	0.84[JPT][hapmap]
rs1431520	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs1431525	0.84[CEU][hapmap];0.88[TSI][hapmap]
rs1431526	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs1431527	0.84[CEU][hapmap]
rs1431532	0.83[CEU][hapmap]
rs1431538	0.94[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap]
rs1541874	0.84[CEU][hapmap]
rs1978671	0.83[CEU][hapmap];0.87[CHB][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs2116314	0.82[CHB][hapmap]
rs2116319	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs2884348	0.84[CEU][hapmap];0.82[CHB][hapmap];0.83[TSI][hapmap]
rs4607508	0.84[EUR][1000 genomes]
rs4719406	0.81[CEU][hapmap]
rs4719407	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4719409	1.00[CEU][hapmap]
rs4721335	0.82[CEU][hapmap]
rs4721338	0.83[CEU][hapmap];0.83[TSI][hapmap]
rs4721342	0.84[GIH][hapmap]
rs6461102	0.84[CEU][hapmap]
rs6943928	0.84[CEU][hapmap]
rs6958691	0.81[CEU][hapmap]
rs7777868	0.83[EUR][1000 genomes]
rs7782805	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7783911	0.82[EUR][1000 genomes]
rs7793372	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7794554	0.83[EUR][1000 genomes]
rs9690425	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606282	chr7:14542836-14579801	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12699636	TMEM195	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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