Variant report

Variant	rs10235540
Chromosome Location	chr7:14509308-14509309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10231750	0.80[CEU][hapmap]
rs10247453	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10263131	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1030578	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10499441	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11762226	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs11767969	0.84[CEU][hapmap]
rs11771647	0.85[CEU][hapmap]
rs11771951	0.92[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs11982590	0.90[CEU][hapmap]
rs12666867	0.82[CEU][hapmap]
rs12670458	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12699617	0.92[CEU][hapmap]
rs12699618	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs12699619	1.00[CEU][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs12699621	0.92[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs12699624	0.84[CEU][hapmap];0.90[TSI][hapmap]
rs12699626	0.85[CEU][hapmap]
rs12699627	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs12699628	0.84[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs12699635	0.88[CEU][hapmap]
rs12699636	0.84[CEU][hapmap];0.88[TSI][hapmap]
rs13223986	0.83[CEU][hapmap]
rs13236153	0.82[CEU][hapmap]
rs13238777	0.97[EUR][1000 genomes]
rs13243691	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1367780	0.88[CEU][hapmap];0.80[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs1367781	0.84[CEU][hapmap];0.90[CHB][hapmap];0.80[TSI][hapmap]
rs1431520	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs1431525	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap]
rs1431526	1.00[CEU][hapmap]
rs1431527	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1431532	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1431538	0.80[CEU][hapmap];0.85[TSI][hapmap]
rs1541874	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1978671	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs2116314	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2116315	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2116319	0.88[CEU][hapmap]
rs2884348	1.00[CEU][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes]
rs34919207	0.82[EUR][1000 genomes]
rs4607508	0.94[EUR][1000 genomes]
rs4719405	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4719406	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4719407	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs4719409	0.84[CEU][hapmap];0.80[JPT][hapmap]
rs4721335	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4721336	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4721337	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4721338	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs4721342	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs6461102	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6943928	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs7777868	0.94[EUR][1000 genomes]
rs7782805	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs7783911	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7793372	0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs7794554	0.97[EUR][1000 genomes]
rs9690425	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links