Variant report
| Variant | rs34919207 |
|---|---|
| Chromosome Location | chr7:14533767-14533768 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:14531022..14533829-chr7:14539304..14542023,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10256038 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1030578 | 0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11768166 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11771951 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12154477 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12699621 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12699623 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12699627 | 0.86[ASN][1000 genomes] |
| rs12699628 | 0.86[ASN][1000 genomes] |
| rs13238777 | 0.80[EUR][1000 genomes] |
| rs13438642 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1367780 | 0.86[ASN][1000 genomes] |
| rs1978671 | 0.80[EUR][1000 genomes] |
| rs2116314 | 0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2116315 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs34862028 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4607508 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4719407 | 0.90[ASN][1000 genomes] |
| rs4721342 | 0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7777868 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7782805 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7783911 | 0.81[EUR][1000 genomes] |
| rs7794554 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9654936 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv1800100 | chr7:14511454-14564068 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14520400-14542400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
