Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10231750	0.86[CEU][hapmap]
rs10245171	0.82[CHB][hapmap]
rs1030578	0.82[CEU][hapmap]
rs11982590	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs12154477	0.85[CEU][hapmap]
rs12699619	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12699624	0.82[CHB][hapmap]
rs12699625	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs12699628	0.82[CHB][hapmap]
rs12699629	0.85[CEU][hapmap]
rs12699645	0.85[CEU][hapmap]
rs1367780	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs1367783	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs1431513	0.84[JPT][hapmap]
rs1431538	0.89[CEU][hapmap]
rs1560481	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1560482	0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1583184	0.83[ASN][1000 genomes]
rs2116314	0.82[CEU][hapmap]
rs2884348	0.82[CHB][hapmap]
rs4721342	0.89[CEU][hapmap]
rs6975021	0.96[CEU][hapmap];0.81[YRI][hapmap]
rs7806743	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv606284	chr7:14594236-14619026	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14595400-14601400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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