Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10237359	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10245826	0.97[EUR][1000 genomes]
rs10266998	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10499442	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11767890	0.84[EUR][1000 genomes]
rs11767969	0.82[EUR][1000 genomes]
rs11771647	0.81[EUR][1000 genomes]
rs12669548	0.80[EUR][1000 genomes]
rs12674261	0.83[EUR][1000 genomes]
rs12699622	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12699626	0.82[EUR][1000 genomes]
rs13236153	0.91[EUR][1000 genomes]
rs1431521	0.83[EUR][1000 genomes]
rs1431528	0.80[EUR][1000 genomes]
rs1897300	0.80[EUR][1000 genomes]
rs1991685	0.82[EUR][1000 genomes]
rs2163508	0.94[EUR][1000 genomes]
rs2357960	0.94[EUR][1000 genomes]
rs3823843	0.88[EUR][1000 genomes]
rs4721343	0.84[EUR][1000 genomes]
rs6461104	0.83[EUR][1000 genomes]
rs7777633	0.80[EUR][1000 genomes]
rs7783571	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7794969	0.96[EUR][1000 genomes]
rs7800703	0.82[EUR][1000 genomes]
rs7801624	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7807072	0.83[EUR][1000 genomes]
rs9639203	0.91[EUR][1000 genomes]
rs9639204	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14520200-14527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:14520400-14542400	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: