Variant report

Variant	rs12538874
Chromosome Location	chr7:14487863-14487864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14487713..14488501-chrX:20040447..20041022,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10237790	0.84[EUR][1000 genomes]
rs10253325	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10264038	0.82[GIH][hapmap];0.81[EUR][1000 genomes]
rs10271285	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs10486031	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs10499440	0.85[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap]
rs10950525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11525791	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap]
rs11526188	0.85[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs11977908	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11978895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12531006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533433	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12533729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12534446	1.00[CEU][hapmap]
rs12540039	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12540646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540892	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1367775	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1431523	0.97[ASN][1000 genomes]
rs1431533	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16878172	0.86[GIH][hapmap]
rs17168175	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17168177	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17168201	0.93[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap]
rs17168203	0.85[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap]
rs171926	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17651138	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17651211	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs1835676	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1835677	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs183808	0.99[EUR][1000 genomes]
rs196750	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs196753	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs196760	1.00[CEU][hapmap]
rs2116317	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2116318	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2163509	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs58759714	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59470727	0.86[AMR][1000 genomes]
rs59778011	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60294470	1.00[EUR][1000 genomes]
rs62443273	0.99[EUR][1000 genomes]
rs73679788	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9639198	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12538874	ETV1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14487600-14488200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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