Variant report

Variant	rs17168201
Chromosome Location	chr7:14496556-14496557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10486031	0.94[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs10499440	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap]
rs10950525	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10950526	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10950529	0.93[EUR][1000 genomes]
rs11526188	0.94[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs11977908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11978895	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12531006	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12532388	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12532453	1.00[CEU][hapmap]
rs12533729	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12533779	0.84[EUR][1000 genomes]
rs12538874	0.93[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.98[ASN][1000 genomes]
rs12540039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540646	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12673303	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs12674246	0.88[EUR][1000 genomes]
rs1431523	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16878172	1.00[ASW][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs16878192	0.86[GIH][hapmap];0.81[EUR][1000 genomes]
rs17168175	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs17168177	0.82[YRI][hapmap]
rs17168203	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap]
rs171926	1.00[CEU][hapmap]
rs17651138	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17651211	0.89[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs2060160	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs59470727	0.84[AMR][1000 genomes]
rs59778011	0.98[ASN][1000 genomes]
rs61207348	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61487234	0.84[EUR][1000 genomes]
rs73679788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9639198	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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