Variant report
| Variant | rs1431523 |
|---|---|
| Chromosome Location | chr7:14497842-14497843 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:14028848..14029461-chr7:14497211..14497977,2 | MCF-7 | breast: | |
| 2 | chr7:13564462..13565362-chr7:14497193..14498173,5 | MCF-7 | breast: | |
| 3 | chr7:13934709..13935267-chr7:14497324..14498029,2 | MCF-7 | breast: | |
| 4 | chr7:13934057..13934906-chr7:14497131..14498025,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000006468 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10499444 | 0.81[EUR][1000 genomes] |
| rs10950522 | 0.83[EUR][1000 genomes] |
| rs10950525 | 0.97[ASN][1000 genomes] |
| rs10950526 | 0.97[ASN][1000 genomes] |
| rs12531006 | 0.97[ASN][1000 genomes] |
| rs12532388 | 0.97[ASN][1000 genomes] |
| rs12533729 | 0.96[ASN][1000 genomes] |
| rs12538874 | 0.97[ASN][1000 genomes] |
| rs12540039 | 0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12540646 | 0.97[ASN][1000 genomes] |
| rs16878172 | 0.81[EUR][1000 genomes] |
| rs59470727 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs59778011 | 0.97[ASN][1000 genomes] |
| rs61207348 | 0.80[EUR][1000 genomes] |
| rs62443470 | 0.84[EUR][1000 genomes] |
| rs62443471 | 0.84[EUR][1000 genomes] |
| rs73679788 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73679795 | 0.82[EUR][1000 genomes] |
| rs7786503 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14497600-14498200 | Enhancers | Brain Germinal Matrix | brain |
