Variant report

Variant	rs16878172
Chromosome Location	chr7:14476181-14476182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10486031	0.86[GIH][hapmap]
rs10499440	0.92[GIH][hapmap];0.84[TSI][hapmap]
rs10950529	0.88[EUR][1000 genomes]
rs11526188	0.92[GIH][hapmap]
rs12532453	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs12533433	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12533729	0.81[EUR][1000 genomes]
rs12538874	0.86[GIH][hapmap]
rs12540039	0.95[EUR][1000 genomes]
rs12540892	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12673303	1.00[ASW][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs12674246	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1367775	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1431523	0.81[EUR][1000 genomes]
rs1431533	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16878192	0.86[GIH][hapmap]
rs17168175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17168177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168201	1.00[ASW][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs17168203	0.92[GIH][hapmap];0.84[TSI][hapmap]
rs17651211	0.92[GIH][hapmap]
rs1835676	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1835677	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2060160	0.89[EUR][1000 genomes]
rs2116317	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2116318	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2163509	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58759714	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60294470	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61207348	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62443273	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73679788	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14473200-14479800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:14476000-14476200	Enhancers	Psoas Muscle	Psoas

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