Variant report

Variant	rs10950529
Chromosome Location	chr7:14519863-14519864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10499444	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12533779	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12540039	0.93[EUR][1000 genomes]
rs12673303	0.84[EUR][1000 genomes]
rs12674246	0.84[EUR][1000 genomes]
rs16878172	0.88[EUR][1000 genomes]
rs16878192	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2060160	0.84[EUR][1000 genomes]
rs61207348	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61487234	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62443470	0.92[ASN][1000 genomes]
rs62443471	0.92[ASN][1000 genomes]
rs73679788	0.93[EUR][1000 genomes]
rs73679795	0.92[ASN][1000 genomes]
rs7786503	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14517800-14520400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:14518000-14520400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:14518200-14520400	Enhancers	Brain Germinal Matrix	brain
4	chr7:14519000-14520000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:14519800-14520400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links