Variant report

Variant	rs12673303
Chromosome Location	chr7:14441284-14441285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10950522	0.86[EUR][1000 genomes]
rs10950529	0.84[EUR][1000 genomes]
rs12532453	1.00[CEU][hapmap]
rs12540039	0.88[EUR][1000 genomes]
rs12540892	0.93[LWK][hapmap]
rs12674246	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1431534	0.87[LWK][hapmap]
rs16878172	1.00[ASW][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs17168201	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[TSI][hapmap]
rs171926	1.00[CEU][hapmap]
rs2060160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61207348	0.86[EUR][1000 genomes]
rs73679788	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14441200-14442200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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