Variant report
| Variant | rs12532453 |
|---|---|
| Chromosome Location | chr7:14450660-14450661 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10950522 | 0.84[EUR][1000 genomes] |
| rs10950529 | 0.82[EUR][1000 genomes] |
| rs12533433 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12540039 | 0.89[EUR][1000 genomes] |
| rs12540892 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12673303 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12674246 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1367775 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1431533 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16878172 | 1.00[CEU][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17168175 | 0.90[JPT][hapmap] |
| rs17168177 | 0.90[JPT][hapmap];0.86[AMR][1000 genomes] |
| rs17168201 | 1.00[CEU][hapmap] |
| rs1835676 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1835677 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2060160 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs2116317 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2116318 | 0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs2163509 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60294470 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61207348 | 0.84[EUR][1000 genomes] |
| rs62443273 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73679788 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3343092 | chr7:14450577-14452475 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
