Variant report

Variant	rs17651211
Chromosome Location	chr7:14490193-14490194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10253325	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10271285	1.00[ASW][hapmap];0.85[CEU][hapmap];0.86[GIH][hapmap];0.81[EUR][1000 genomes]
rs10486031	0.94[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs10499440	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs10950522	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10950525	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10950526	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11525791	1.00[ASW][hapmap];0.85[CEU][hapmap];0.86[GIH][hapmap]
rs11526188	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11977908	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11978895	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12531006	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12532388	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12533433	0.85[CEU][hapmap]
rs12533729	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12534446	0.85[CEU][hapmap]
rs12538874	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12540039	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12540646	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12540892	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs1367775	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs1431523	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16878172	0.92[GIH][hapmap];0.86[EUR][1000 genomes]
rs17168175	0.85[CEU][hapmap]
rs17168201	0.89[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs17168203	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs171926	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17651138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs196750	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs196760	0.82[CEU][hapmap]
rs2116317	0.85[CEU][hapmap]
rs2116318	0.85[CEU][hapmap]
rs2163509	0.85[CEU][hapmap]
rs59470727	0.83[AMR][1000 genomes]
rs59778011	0.99[ASN][1000 genomes]
rs62443470	0.80[EUR][1000 genomes]
rs62443471	0.80[EUR][1000 genomes]
rs73679788	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7786503	0.80[EUR][1000 genomes]
rs9639198	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17651211	ETV1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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